miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|186855833|gb|EX273529.1|EX273529 GGGGGGCTATGGCCGGGGGATCGGGCCTTACGGCCGGGGTCTCAACCATAAACGATGCCGACCAGGGATCAGCGGGAGTG
TGGAAGAAGCAGAATCAAATTACGCCTCTAAAAGAAAAAGAAAAACAAAAACAAAAACAGAATTCTGGAAGGGTTGATGG
AACAATCCTTCAACAACACAACCAGTACTGATCTCAAGTACAAGGGTGTAAGAAAGCGGAAATGGGGGAAGTGGGTGTCG
GAAATCAGACTTCCCAACAGCCGGGAACGCATTTGGTTGGGCTCCTACGACACGCCGGAGAAGGCGGCGCGTGCTTTTGA
CGCGGCCCTTTACTGTCTCCGAGGACCCCAAGCCAAGTTCAACTTCCCGGAAAACCCCCCGGAGATCGAGGGTGGCCGGT
CGATGTCTCCCCAACAAATACAGTTGGTAGCGAGTAGGTTTGCCAACGAGGAGCCACAGCCACCTGTACATCATCATCAT
CATCATCATCAAGATGGTACGGATGGTGGTGATAATTCGTCACGTGCAAATATCGAAACGTCGTCGTCTTCAGTGTCAGA
TGGGACAATAGGTCAAGTCGAAAGTGACATGAACAACGTTTTTTATGAGACATGTGACGTGAATCATATCGATTGGTCGT
ATTGGAACATGTTGGATTCCGGAGTGACTGCATGCGATTTTGGGTTTGTCCCACCACCACCAGAACCAACCATTTTTGAT
AATGGAGACGATGATGACATCACCCCTGAAGATGATTTTTCAAAACCAGTCATTTCTTTGGAACTTCTAAAGCATATATA
TATGTCTCTCTTCGCTTCAAATTTTTACCTGGGTCAAGAGATTATTATAATGTTTAACTACAGGACTGGGTAGTTGGATA
GTGAAGAGATGGGCGATTTTAGCTGCTCATCTATCTTCCAACCCTCTCTGTCTCAT




Most similar to sp|Q9C591|ERF16_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9C591|ERF16_ARATH Ethylene-responsive transcription factor
           ERF016 OS=Arabidopsis thaliana GN=ERF016 PE=2 SV=1
          Length = 216

 Score =  165 bits (418), Expect = 4e-40
 Identities = 96/182 (52%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
 Frame = +1

Query: 196 KYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTPEKAARAFDAALYCLRGPQAKFNFPEN 375
           KY GVRKRKWGKWV+EIRLPNSR+RIWLGS+D+ EKAARAFDAALYCLRGP A+FNFP+N
Sbjct: 6   KYTGVRKRKWGKWVAEIRLPNSRDRIWLGSFDSAEKAARAFDAALYCLRGPGARFNFPDN 65

Query: 376 PPEIEGGRSMSPQQIQLVASRFANEEPQPPVXXXXXXXQDGTDGGDNSSRANIETSSSSV 555
           PPEI GGRS++PQQIQ+VASRFA EE   P          G    +     +     +S 
Sbjct: 66  PPEIPGGRSLTPQQIQVVASRFACEEELLPPEQHHPSPPRGDHNTEEEVIISARGEINSG 125

Query: 556 SDG-TIGQVESDMNNVFYETCDVNHIDW-SYWNMLDSGVTACDFGFVPPPPEPTIFDNGD 729
           S G T+GQV  D NN      + N  D  SYW ++       +  FV PP     F    
Sbjct: 126 SGGPTLGQVGEDNNN------EGNSNDTSSYWPLIWE-----EENFVGPPNSDHEFGFFT 174

Query: 730 DD 735
           DD
Sbjct: 175 DD 176